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Resolving molecular diffusion and aggregation of antibody proteins with megahertz X-ray free-electron laser pulses
Stockholm University, Faculty of Science, Department of Physics.ORCID iD: 0000-0003-0160-9478
Stockholm University, Faculty of Science, Department of Physics.
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Number of Authors: 292022 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 13, article id 5528Article in journal (Refereed) Published
Abstract [en]

X-ray free-electron lasers (XFELs) with megahertz repetition rate can provide novel insights into structural dynamics of biological macromolecule solutions. However, very high dose rates can lead to beam-induced dynamics and structural changes due to radiation damage. Here, we probe the dynamics of dense antibody protein (Ig-PEG) solutions using megahertz X-ray photon correlation spectroscopy (MHz-XPCS) at the European XFEL. By varying the total dose and dose rate, we identify a regime for measuring the motion of proteins in their first coordination shell, quantify XFEL-induced effects such as driven motion, and map out the extent of agglomeration dynamics. The results indicate that for average dose rates below 1.06 kGy μs−1 in a time window up to 10 μs, it is possible to capture the protein dynamics before the onset of beam induced aggregation. We refer to this approach as correlation before aggregation and demonstrate that MHz-XPCS bridges an important spatio-temporal gap in measurement techniques for biological samples.

Place, publisher, year, edition, pages
2022. Vol. 13, article id 5528
National Category
Subatomic Physics
Identifiers
URN: urn:nbn:se:su:diva-210286DOI: 10.1038/s41467-022-33154-7ISI: 000857058900009PubMedID: 36130930Scopus ID: 2-s2.0-85138319045OAI: oai:DiVA.org:su-210286DiVA, id: diva2:1702756
Available from: 2022-10-11 Created: 2022-10-11 Last updated: 2025-02-14Bibliographically approved
In thesis
1.
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2. Exploring Proteins at Cryogenic Temperatures Using X-ray Scattering
Open this publication in new window or tab >>Exploring Proteins at Cryogenic Temperatures Using X-ray Scattering
2024 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Understanding the molecular dynamics and diffusivity of proteins at cryogenic temperatures is essential for optimizing cryopreservation techniques of biological materials, with applications ranging from biotechnology to food science. This knowledge is also relevant for organism living under extreme conditions, such as the sub-zero temperatures of the Arctic Sea. A key feature observed at cryogenic temperatures is the protein dynamic transition near T = 230 K, where proteins lose their flexibility and functionality. The nature of this transition is still elusive, also due to the experimental challenge posed from the crystallization of water at these low temperatures. We investigate the structural dynamics of proteins under supercooled conditions with two approaches: hydrated proteins, where the absence of bulk water prevents freezing, and cryoprotected protein solutions, where cryoprotectants lower the water melting point.

We employ existing X-ray scattering techniques, namely small- and wide- angle X-ray scattering. Additionally, we advance the development of X-ray Photon Correlation Spectroscopy for studying biological systems. In hydrated lysozyme, we observe water temperature-dependent structural changes with a crossover at T = 230 K. Notably, nanoscale dynamics of hydrated proteins reveal enhanced density fluctuations at the same temperature, consistent with the crossing of the hypothesized Widom line in bulk water. This finding suggest a clear link between the protein dynamic transition and the water properties. We extend these studies to cryoprotected ferritin solutions. We explore the collective dynamics of proteins at molecular length scales and observed anomalous diffusion, which was enhanced with increasing protein concentration. Furthermore, we detect a deviation from the Stokes-Einstein relation and a shift in the arrest temperature of the solvent to lower temperature, likely caused by the presence of proteins, which significantly alter the local solvent environment. These results suggests that protein mobility near glassy conditions and at supercooled temperatures may differ drastically from predictions based on solvent viscosity.  

Place, publisher, year, edition, pages
Stockholm: Department of Physics, Stockholm University, 2024. p. 67
Keywords
Protein dynamics, Aqueous solutions, X-ray scattering, X-ray photon correlation spectroscopy, Cryoprotectants
National Category
Physical Sciences Condensed Matter Physics Chemical Sciences Biophysics
Research subject
Chemical Physics
Identifiers
urn:nbn:se:su:diva-235837 (URN)978-91-8107-034-7 (ISBN)978-91-8107-035-4 (ISBN)
Public defence
2025-01-20, FD5, AlbaNova universitetscentrum, Roslagstullsbacken 21 and online via Zoom, public link is available at the department website, Stockholm, 09:00 (English)
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Available from: 2024-12-18 Created: 2024-11-25 Last updated: 2025-02-20Bibliographically approved

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