Friction stir weld (FSW) has generated a high interest in many industry segments in the past 20 years. Along with new industrial challenges, more complex geometries and high quality demands, a better control of the welding process is required. New approaches using temperature controlled welding have been proposed and revealed good results. However, few temperature measurement methods exist which are accurate, fast and industrially suitable. A new and simple sensor solution, the Tool-Workpiece Thermocouple (TWT) method, based on the thermoelectric effect was recently developed.This paper presents a calibration solution for the TWT method where the TWT temperature is compared to calibrated thermocouples inside the tool. The correspondence between both methods is shown. Furthermore, a calibration strategy in different aluminium alloys is proposed, which is based on plunge iterations. This allows accurate temperature monitoring during welding, without the need for thermocouples inside the tool.