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Simulated single molecule microscopy with SMeagol
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Molecular Systems Biology.ORCID iD: 0000-0003-4200-0191
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Molecular Systems Biology.
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Molecular Systems Biology.
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Molecular Systems Biology.
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2016 (English)In: Bioinformatics, ISSN 1367-4803, E-ISSN 1367-4811, Vol. 32, no 15, 2394-2395 p.Article in journal (Refereed) Published
Abstract [en]

Summary: SMeagol is a software tool to simulate highly realistic microscopy data based on spatial systems biology models, in order to facilitate development, validation and optimization of advanced analysis methods for live cell single molecule microscopy data.

Availability and implementation: SMeagol runs on Matlab R2014 and later, and uses compiled binaries in C for reaction–diffusion simulations. Documentation, source code and binaries for Mac OS, Windows and Ubuntu Linux can be downloaded from http://smeagol.sourceforge.net.

Place, publisher, year, edition, pages
2016. Vol. 32, no 15, 2394-2395 p.
Keyword [en]
single particle tracking, microscopy, simulations
National Category
Biophysics
Research subject
Biology; Physics with specialization in Biophysics
Identifiers
URN: urn:nbn:se:uu:diva-282965DOI: 10.1093/bioinformatics/btw109ISI: 000383184500030PubMedID: 27153711OAI: oai:DiVA.org:uu-282965DiVA: diva2:917966
Funder
eSSENCE - An eScience CollaborationEU, European Research Council, 616047Swedish Research CouncilKnut and Alice Wallenberg FoundationSwedish Foundation for Strategic Research
Available from: 2016-04-08 Created: 2016-04-08 Last updated: 2016-11-23Bibliographically approved

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