Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Global expression profiling of low temperature induced genes in the chilling tolerant japonica rice jumli marshi
CropTailor AB, Lund, Sweden.
University of Skövde, School of Life Sciences. University of Skövde, The Systems Biology Research Centre. CropTailor AB, Lund, Sweden.
University of Skövde, School of Life Sciences. University of Skövde, The Systems Biology Research Centre.
CropTailor AB, Lund, Sweden / Lund University, Lund, Sweden.
2013 (English)In: PLoS ONE, ISSN 1932-6203, E-ISSN 1932-6203, Vol. 8, no 12, e81729- p., e81729Article in journal (Refereed) Published
Abstract [en]

Low temperature is a key factor that limits growth and productivity of many important agronomical crops worldwide. Rice (Oryza sativa L.) is negatively affected already at temperatures below +10°C and is therefore denoted as chilling sensitive. However, chilling tolerant rice cultivars exist and can be commercially cultivated at altitudes up to 3,050 meters with temperatures reaching as low as +4°C. In this work, the global transcriptional response to cold stress (+4°C) was studied in the Nepalese highland variety Jumli Marshi (spp. japonica) and 4,636 genes were identified as significantly differentially expressed within 24 hours of cold stress. Comparison with previously published microarray data from one chilling tolerant and two sensitive rice cultivars identified 182 genes differentially expressed (DE) upon cold stress in all four rice cultivars and 511 genes DE only in the chilling tolerant rice. Promoter analysis of the 182 genes suggests a complex cross-talk between ABRE and CBF regulons. Promoter analysis of the 511 genes identified over-represented ABRE motifs but not DRE motifs, suggesting a role for ABA signaling in cold tolerance. Moreover, 2,101 genes were DE in Jumli Marshi alone. By chromosomal localization analysis, 473 of these cold responsive genes were located within 13 different QTLs previously identified as cold associated.

Place, publisher, year, edition, pages
PLoS , 2013. Vol. 8, no 12, e81729- p., e81729
National Category
Natural Sciences
Research subject
Natural sciences
Identifiers
URN: urn:nbn:se:his:diva-8711DOI: 10.1371/journal.pone.0081729ISI: 000328731800024PubMedID: 24349120Scopus ID: 2-s2.0-84892623587OAI: oai:DiVA.org:his-8711DiVA: diva2:683146
Available from: 2014-01-02 Created: 2014-01-02 Last updated: 2017-12-06Bibliographically approved

Open Access in DiVA

fulltext(5510 kB)453 downloads
File information
File name FULLTEXT01.pdfFile size 5510 kBChecksum SHA-512
accb4c7f24970c6fc74c3c1f6e49c2a2aad083a6adab9f425c8c56476abeaede64ec537a272e5201a38dfc15db7e9b7940bb173ffa79fdac4d0f901628c2876f
Type fulltextMimetype application/pdf

Other links

Publisher's full textPubMedScopus

Search in DiVA

By author/editor
Lindlöf, AngelicaOlsson, Björn
By organisation
School of Life SciencesThe Systems Biology Research Centre
In the same journal
PLoS ONE
Natural Sciences

Search outside of DiVA

GoogleGoogle Scholar
Total: 453 downloads
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

doi
pubmed
urn-nbn

Altmetric score

doi
pubmed
urn-nbn
Total: 898 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf