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Network characteristics of individual pigments in cyanobacterial photosystem II core complexes
Sungkyunkwan University.
Umeå University, Faculty of Science and Technology, Department of Physics.ORCID iD: 0000-0003-2156-1096
2013 (English)In: Journal of the Korean Physical Society, ISSN 0374-4884, E-ISSN 1976-8524, Vol. 63, no 11, 2255-2261 p.Article in journal (Refereed) Published
Abstract [en]

Part of the excitation energy transfer (EET) characteristics of the photosystem II (PSII) comes from the interconnection between pigments. To understand the correlation between the EET and the pigments’ interaction structure, we construct a network from the EET rates which are related to both the distance between the pigments (chlorophylls and pheophytins) and their spatial orientations. Especially, we investigate how well the PS II core complex’s EET functionality can be explained by using only the network topology in Thermosynechococcus vulcanus 1.9 °A. Starting from the Förster theory, we construct a network of EET pathways. For an analysis of the network structure, we calculate common network-structural measures like betweenness centrality, eigenvector centrality and weighted clustering. These measures can reflect the role of individual pigments in the EET network. In our work, we found that some well-known properties were reproduced by the network analysis of the simplified network, which means that the topology of the network encodes functionally relevant information. For example, from the network structural analysis, we can infer that most of the chlorophyll molecules (clorophylls) in the pigment-protein complex CP47 have heightened probability to transfer energy compared with other chlorophylls. We also see that the active branch chlorophylls in the reaction center are characterized by a high eigenvector centrality, a high betweenness centrality and a low weighted clustering coefficient. This is indicative of functionally important vertices.

Place, publisher, year, edition, pages
2013. Vol. 63, no 11, 2255-2261 p.
Keyword [en]
Network theory, Photosynthesis, Excitation transfer
National Category
Biophysics
Identifiers
URN: urn:nbn:se:umu:diva-84303DOI: 10.3938/jkps.63.2255OAI: oai:DiVA.org:umu-84303DiVA: diva2:682093
Funder
Swedish Research Council, 2012-3651
Available from: 2013-12-23 Created: 2013-12-23 Last updated: 2017-12-06Bibliographically approved

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Holme, Petter

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