Evolutionary Conservation of the Ribosomal Biogenesis Factor Rbm19/Mrd1: Implications for Function
2012 (English)In: PLoS ONE, ISSN 1932-6203, Vol. 7, no 9Article in journal (Refereed) Published
Ribosome biogenesis in eukaryotes requires coordinated folding and assembly of a pre-rRNA into sequential pre-rRNA-protein complexes in which chemical modifications and RNA cleavages occur. These processes require many small nucleolar RNAs (snoRNAs) and proteins. Rbm19/Mrd1 is one such protein that is built from multiple RNA-binding domains (RBDs). We find that Rbm19/Mrd1 with five RBDs is present in all branches of the eukaryotic phylogenetic tree, except in animals and Choanoflagellates, that instead have a version with six RBDs and Microsporidia which have a minimal Rbm19/Mrd1 protein with four RBDs. Rbm19/Mrd1 therefore evolved as a multi-RBD protein very early in eukaryotes. The linkers between the RBDs have conserved properties; they are disordered, except for linker 3, and position the RBDs at conserved relative distances from each other. All but one of the RBDs have conserved properties for RNA-binding and each RBD has a specific consensus sequence and a conserved position in the protein, suggesting a functionally important modular design. The patterns of evolutionary conservation provide information for experimental analyses of the function of Rbm19/Mrd1. In vivo mutational analysis confirmed that a highly conserved loop 5-β4-strand in RBD6 is essential for function.
Place, publisher, year, edition, pages
2012. Vol. 7, no 9
Bioinformatics and Systems Biology
IdentifiersURN: urn:nbn:se:liu:diva-81955DOI: 10.1371/journal.pone.0043786ISI: 000308738500022OAI: oai:DiVA.org:liu-81955DiVA: diva2:556845
funding agencies|Swedish Research Council||Carl Tryggers Stiftelse||Linkoping University||2012-09-262012-09-262012-11-28