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Phenotypic evolution studied by layered stochastic differential equations
Uppsala University, Disciplinary Domain of Science and Technology, Earth Sciences, Department of Earth Sciences, Palaeobiology.
2012 (English)In: Annals of Applied Statistics, ISSN 1932-6157, E-ISSN 1941-7330, Vol. 6, no 4, 1531-1551 p.Article in journal (Refereed) Published
Abstract [en]

Time series of cell size evolution in unicellular marine algae (division Haptophyta; Coccolithus lineage), covering 57 million years, are studied by a system of linear stochastic differential equations of hierarchical structure.

The data consists of size measurements of fossilized calcite platelets (coccoliths) that cover the living cell, found in deep-sea sediment cores from six sites in the world oceans and dated to irregularly points in time. To accommodate biological theory of populations tracking their fitness optima, and to allow potentially interpretable correlations in time and space, the model framework allows for an upper layer of partially observed site-specific population means, a layer of site-specific theoretical fitness optima and a bottom layer representing environmental and ecological processes. While the modeled process has many components, it is Gaussian and analytically tractable. A total of 710 model specifications within this framework are compared and inference is drawn with respect to model structure, evolutionary speed and the effect of global temperature.

Place, publisher, year, edition, pages
2012. Vol. 6, no 4, 1531-1551 p.
National Category
Natural Sciences Geosciences, Multidisciplinary Probability Theory and Statistics
Identifiers
URN: urn:nbn:se:uu:diva-179711DOI: 10.1214/12-AOAS559ISI: 000314458400009OAI: oai:DiVA.org:uu-179711DiVA: diva2:545907
Available from: 2012-08-23 Created: 2012-08-21 Last updated: 2017-12-07Bibliographically approved

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Reitan et al. 2012_accepted ms(360 kB)199 downloads
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Henderiks, Jorijntje

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