We study CP violation (CPV) in the sneutrino sector within the B-L extension of the minimal supersymmetric Standard Model, wherein an inverse seesaw mechanism has been implemented. CPV arises from the new superpotential couplings in the (s)neutrino sector, which can be complex and the mixing of CP eigenstates induced by those couplings. CPV leads to asymmetries in so-called T-odd observables, but we argue that such asymmetries also lead to a wider distribution of those observables. We look at a final state where a sneutrino decays to a lepton, two jets, and missing transverse momentum at the Future Circular Collider operating in hadron-hadron mode at 100 TeV and with a luminosity of 3 ab-1. In order to exclude the CP conserving scenario we need to improve traditional analysis by introducing boosted decision trees using both standard kinematic variables and T-odd observables and we need Z' boson not too much above current bounds as a portal to produce sneutrinos efficiently.