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Physiology-informed pharmacometric models for bacterial infections
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmacy.ORCID iD: 0000-0002-6914-8754
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Bacterial infections remain a major global health challenge, further exacerbated by the rise of antibiotic resistance. Understanding the interplay between pathogen dynamics, host responses, and drug pharmacokinetics (PK) and pharmacodynamics (PD) is crucial for optimising treatment strategies. Pharmacometric modelling offers a powerful approach to integrating preclinical and clinical data, enhancing predictions of drug efficacy and infection progression. This thesis applies physiology-informed pharmacometric modelling to characterise bacterial infections and antibiotic action under various physiological conditions.

Four key studies underpin this work. First, a cytokine response model was developed to describe inflammatory dynamics in a porcine sepsis model, capturing the role of endotoxin in immune activation. The model demonstrated how bacterial exposure patterns influence cytokine release, providing potential for model application in sepsis drug development. Second, physiologically-based pharmacokinetic (PBPK) modelling was employed to investigate meropenem disposition in septic patients, revealing sepsis-induced alterations in drug distribution and elimination. The findings emphasise the need for refined PBPK approaches that incorporate dynamic changes in renal transporter activity and fluid balance in septic patients.

Third, plasma effects on bacterial time-kill dynamics were explored, revealing enhanced bacterial suppression in plasma-spiked media compared to traditional broth models. The results suggest that plasma components, possibly immune factors such as the complement system, influence bacterial growth and antibiotic activity. Finally, a lung-mimicking transwell tissue model was utilised to study antibiotic PKPD in lung infections. The developed model captured notable differences in bacterial growth and antibiotic activity between broth and lung tissue models, demonstrating drug-specific interactions with lung-like conditions.

This thesis advances the understanding of the dynamics of the host-pathogen interactions, the antibiotic PK and PKPD under physiological conditions, and the utility of novel in vitro models for improved in vivo translation. By bridging gaps between experimental and clinical data, these findings may contribute to the development of more effective, personalised treatment strategies for infectious diseases.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2025. , p. 65
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Pharmacy, ISSN 1651-6192 ; 374
Keywords [en]
pharmacometrics, pharmacokinetics, pharmacodynamics, PBPK, antibiotics, bacterial infections
National Category
Pharmaceutical Sciences
Research subject
Pharmaceutical Science
Identifiers
URN: urn:nbn:se:uu:diva-552860ISBN: 978-91-513-2431-9 (print)OAI: oai:DiVA.org:uu-552860DiVA, id: diva2:1945513
Public defence
2025-05-09, A1:107a, Uppsala Biomedical Centre (BMC), Husargatan 3, Uppsala, 09:15 (English)
Opponent
Supervisors
Available from: 2025-04-14 Created: 2025-03-18 Last updated: 2025-05-05
List of papers
1. Predicting cytokine kinetics during sepsis; a modelling framework from a porcine sepsis model with live Escherichia coli
Open this publication in new window or tab >>Predicting cytokine kinetics during sepsis; a modelling framework from a porcine sepsis model with live Escherichia coli
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2023 (English)In: Cytokine, ISSN 1043-4666, E-ISSN 1096-0023, Vol. 169, article id 156296Article in journal (Refereed) Published
Abstract [en]

Background: Describing the kinetics of cytokines involved as biomarkers of sepsis progression could help to optimise interventions in septic patients. This work aimed to quantitively characterise the cytokine kinetics upon exposure to live E. coli by developing an in silico model, and to explore predicted cytokine kinetics at different bacterial exposure scenarios.

Methods: Data from published in vivo studies using a porcine sepsis model were analysed. A model describing the time courses of bacterial dynamics, endotoxin (ETX) release, and the kinetics of TNF and IL-6 was developed. The model structure was extended from a published model that quantifies the ETX-cytokines relationship. An external model evaluation was conducted by applying the model to literature data. Model simulations were performed to explore the sensitivity of the host response towards differences in the input rate of bacteria, while keeping the total bacterial burden constant.

Results: The analysis included 645 observations from 30 animals. The blood bacterial count was well described by a one-compartment model with linear elimination. A scaling factor was estimated to quantify the ETX release by bacteria. The model successfully described the profiles of TNF, and IL-6 without a need to modify the ETXcytokines model structure. The kinetics of TNF, and IL-6 in the external datasets were well predicted. According to the simulations, the ETX tolerance development results in that low initial input rates of bacteria trigger the lowest cytokine release.

Conclusion: The model quantitively described and predicted the cytokine kinetics triggered by E. coli exposure. The host response was found to be sensitive to the bacterial exposure rate given the same total bacterial burden.

Place, publisher, year, edition, pages
ElsevierElsevier BV, 2023
Keywords
Sepsis, IL-6, TNF, Non-linear mixed effect modelling
National Category
Infectious Medicine
Identifiers
urn:nbn:se:uu:diva-509235 (URN)10.1016/j.cyto.2023.156296 (DOI)001043844600001 ()37467709 (PubMedID)
Funder
Swedish Research Council, 2022-06725Swedish Research Council, 2018-05973
Available from: 2023-08-21 Created: 2023-08-21 Last updated: 2025-03-18Bibliographically approved
2. Physiologically-based pharmacokinetic modelling in sepsis: A tool to elucidate how pathophysiology affects meropenem pharmacokinetics
Open this publication in new window or tab >>Physiologically-based pharmacokinetic modelling in sepsis: A tool to elucidate how pathophysiology affects meropenem pharmacokinetics
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2024 (English)In: International Journal of Antimicrobial Agents, ISSN 0924-8579, E-ISSN 1872-7913, Vol. 64, no 6, article id 107352Article in journal (Refereed) Published
Abstract [en]

Objectives

Applying physiologically-based pharmacokinetic (PBPK) modelling in sepsis could help to better understand how PK changes are influenced by drug- and patient-related factors. We aimed to elucidate the influence of sepsis pathophysiology on the PK of meropenem by applying PBPK modelling.

Methods

A whole-body meropenem PBPK model was developed and evaluated in healthy individuals, and renally impaired non-septic patients. Sepsis-induced physiological changes in body composition, organ blood flow, kidney function, albumin, and haematocrit were implemented according to a previously proposed PBPK sepsis model. Model performance was evaluated, and a local sensitivity analysis was conducted.

Results

The model-predicted PK metrics (AUC, Cmax, CL, Vss) were within 1.33-fold-error margin of published data for 87.5% of the simulated profiles in healthy individuals. In sepsis, the model provided good predictions for literature-digitised average plasma and tissue exposure data, where the model-predicted AUC was within 1.33-fold-error margin for 9 out 11 simulated study profiles. Furthermore, the model was applied to individual plasma concentration data from 52 septic patients, where the model-predicted AUC, Cmax, and CL had a fold-error ratio range of 0.98–1.12, with alignment of the predicted and observed variability. For Vss, the fold-error ratio was 0.81, and the model underpredicted the population variability. CL was sensitive to renal plasma clearance, and kidney volume, whereas Vss was sensitive to the unbound fraction, organ volume fraction of the interstitial compartment, and the organ volume.

Conclusions

These findings may be extended to more diverse drug types and support a more mechanistic understanding of the effect of sepsis on drug exposure.

Place, publisher, year, edition, pages
Elsevier, 2024
Keywords
Sepsis, PBPK, Meropenem
National Category
Pharmacology and Toxicology Pharmaceutical Sciences
Identifiers
urn:nbn:se:uu:diva-543134 (URN)10.1016/j.ijantimicag.2024.107352 (DOI)001350097200001 ()39343059 (PubMedID)
Funder
EU, Horizon 2020, 861323
Available from: 2024-11-19 Created: 2024-11-19 Last updated: 2025-03-18Bibliographically approved
3. Plasma effects on bacterial time-kill dynamics: Insights from a PK/PD modelling analysis
Open this publication in new window or tab >>Plasma effects on bacterial time-kill dynamics: Insights from a PK/PD modelling analysis
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2025 (English)In: International Journal of Antimicrobial Agents, ISSN 0924-8579, E-ISSN 1872-7913, Vol. 65, no 2, article id 107441Article in journal (Refereed) Published
Abstract [en]

In vitro time-kill curve (TKC) experiments are an important part of the pharmacokinetic- pharmacodynamic (PKPD) characterisation of antibiotics. Traditional TKCs use Mueller-Hinton broth (MHB), which lacks specific plasma components that could potentially influence the bacterial growth and killing dynamics, and affect translation to in vivo. This study aimed to evaluate the impact of plasma on the PKPD characterisation of two antibiotics; cefazolin and clindamycin. TKC experiments were conducted in pure MHB, and MHB spiked with 20% and 70% human plasma. Plasma protein binding (PPB) data were available, and a linear model described cefazolin's PPB, while clindamycin's PPB was best described by a second-order polynomial model. PKPD models were developed based on pure MHB and described drug effects using an Emax model, with consideration of adaptive resistance for cefazolin. The observed bacterial growth and killing in the plasma-spiked MHB TKC data was insufficiently described when applying the developed PPB and PKPD models. In plasma spiked MHB, a growth delay was observed, estimated to 0.25 h (20% plasma), or 2.90 h (70% plasma) for cefazolin, and 0.64 h (20% plasma), or 1.40 h (70% plasma) for clindamycin. Furthermore, the drug effect was higher than expected in plasma-spiked MHB, with bacterial stasis and/or killing at unbound concentrations below MIC, necessitating drug effect parameter scaling (C50 for cefazolin, Hill coefficient for clindamycin). The findings highlight significant differences in bacterial growth and killing dynamics between pure MHB and plasma-spiked MHB and exemplify how PKPD modelling may be used to improve the translation of in vitro results.

Place, publisher, year, edition, pages
Elsevier, 2025
Keywords
Time-kill curve (TKC), Pharmacokinetics-pharmacodynamics (PKPD), Plasma protein binding (PPB)
National Category
Pharmaceutical Sciences
Identifiers
urn:nbn:se:uu:diva-550400 (URN)10.1016/j.ijantimicag.2024.107441 (DOI)001409631200001 ()39778755 (PubMedID)2-s2.0-85215546161 (Scopus ID)
Funder
EU, Horizon 2020, 861323
Available from: 2025-02-19 Created: 2025-02-19 Last updated: 2025-03-18Bibliographically approved
4. Modelling antibiotic PKPD in a lung-mimicking transwell model
Open this publication in new window or tab >>Modelling antibiotic PKPD in a lung-mimicking transwell model
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(English)Manuscript (preprint) (Other academic)
National Category
Pharmaceutical Sciences
Identifiers
urn:nbn:se:uu:diva-551982 (URN)
Available from: 2025-03-05 Created: 2025-03-05 Last updated: 2025-03-18

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