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In vitro models of the human intestine for better prediction of drug absorption, pre-systemic metabolism, and bioavailability
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmacy. Uppsala University. (Molecular Pharmaceutics)ORCID iD: 0000-0003-4252-6329
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Description
Abstract [en]

The human small intestine is the primary site for drug absorption, hence intestinal in vitro models can bridge the gap to in vivo studies ultimately improving the drug development processes. This PhD thesis explores the global proteome and functional characteristics of four in vitro models that recapitulate the epithelial barrier of the human small intestine.

In Project I, we analyzed the global proteome of 2D enteroid monolayer models, focusing on markers related to stem cells, differentiation, actin regulatory proteins, and ADME proteins. We assessed the maturation of these models to evaluate their potential for studying bacterial infections and drug disposition, thereby establishing their functional capacity to replicate in vivo conditions.

Project II built upon the findings from Project I by evaluating the differentiation level of human intestinal 3D enteroid models through global proteomics and functional assays. Our proteomics analysis revealed that the 3D models exhibit a higher level of differentiation compared to 2D models. We also demonstrated the functionality of some key clinically important proteins, including CYP3A4, Pgp/MDR1, and BCRP, within the enteroids. This project confirms that these advanced 3D models are well-suited for studying drug metabolism and transport.

While enteroids are derived from stem cells and differentiated under laboratory conditions, freshly isolated enterocytes come from human tissue and are already fully differentiated. This potentially makes them a more accurate representation of in vivo conditions. Leveraging this advantage, in Project III, we focus on improving the isolation method for enterocytes from fresh jejunum tissue specimens. We quantified important metabolic enzymes, performed drug metabolism assays and demonstrated the enterocytes functionality for intestinal drug metabolism studies.

In Project IV, we develop a co-culture model using two MDCK cell lines that overexpress human MDR1 and BCRP. Following global proteomics characterization, we performed drug transport studies with both specific and shared drug substrates in Transwell and the Enabling Absorption Device settings. Our findings demonstrate the potential of this co-culture model for studying the role of active efflux in the absorption of drugs that require advanced formulations.

Together, these projects enhance our understanding of intestinal in vitro models, supporting their application in drug development research.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2025. , p. 55
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Pharmacy, ISSN 1651-6192 ; 371
Keywords [en]
Human small intestine, enteroids, enterocytes, MDCK, proteomics, ADME, drug metabolism, drug transport, live-cell imaging
National Category
Pharmaceutical Sciences
Research subject
Pharmaceutical Science
Identifiers
URN: urn:nbn:se:uu:diva-551251ISBN: 978-91-513-2400-5 (print)OAI: oai:DiVA.org:uu-551251DiVA, id: diva2:1940278
Public defence
2025-04-11, A1:107a, Biomedicinskt Centrum, Husargatan 3, Uppsala, 09:15 (English)
Opponent
Supervisors
Available from: 2025-03-21 Created: 2025-02-26 Last updated: 2025-03-21
List of papers
1. Maturation of Human Intestinal Epithelial Cell Layers Fortifies the Apical Surface against Salmonella Attack
Open this publication in new window or tab >>Maturation of Human Intestinal Epithelial Cell Layers Fortifies the Apical Surface against Salmonella Attack
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2024 (English)In: Cell Reports, ISSN 2639-1856, E-ISSN 2211-1247Article in journal (Other academic) Submitted
Place, publisher, year, edition, pages
Cell Press, 2024
Keywords
Intestinal epithelium, Epithelial cell, Differentiation, Organoid, Infection, Live-cell imaging, Salmonella, Mucin, Brush border, Glycocalyx
National Category
Cell and Molecular Biology Microbiology in the Medical Area
Identifiers
urn:nbn:se:uu:diva-551249 (URN)
Available from: 2025-02-22 Created: 2025-02-22 Last updated: 2025-02-26
2. Human jejunal enteroids for studies of intestinal epithelial drug transport and metabolism
Open this publication in new window or tab >>Human jejunal enteroids for studies of intestinal epithelial drug transport and metabolism
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(English)Manuscript (preprint) (Other academic)
Abstract [en]

Intestinal enteroids are stem cell-based “mini-guts” that mimic many aspects of the corresponding epithelial barrier in vivo. Here, we established and characterized differentiated apical-out (AO) and basal-out (BO) jejunal enteroids in suspension and followed their differentiation by quantitative global proteomics and different microscopic techniques. The barrier integrity and function and subcellular location of nutrient and clinically important drug transporters were investigated in the matured enteroids using live-cell microscopy. The presystemic metabolism of two drugs by CYP3A4 was determined and the results were used to predict the pharmacokinetics after oral administration by a PBPK population model. The differentiated AO enteroids displayed a protein profile that overlapped both qualitatively and quantitatively with that of freshly isolated jejunal enterocytes and tissue. They exhibited a morphology that recapitulates the mature villus enterocyte in vivo, formed an intact barrier with a well-developed glycocalyx and are impermeable to the hydrophilic low molecular weight compound lucifer yellow and transported a medium chain fatty acid derivative by FAT4 into lipid deposits. The clinically important ABC-transporters Pgp and BCRP were expressed at near in vivo levels, had the correct subcellular localization and effluxed their substrates. Terfenadine and midazolam were metabolized by CYP3A4 and the results were used to predict the clinical pharmacokinetics of the drugs after oral administration with good accuracy. We conclude that suspended 3D AO enteroids provide a physiologically relevant model for studies of intestinal function that offers convenient access to the apical surface and is easy to dispense in multi-wells formats for large scale experimentation.

Keywords
Human small intestine, enteroids, enterocytes, proteomics, ADME, drug metabolism, drug transport, live-cell imaging
National Category
Pharmaceutical Sciences Cell and Molecular Biology
Research subject
Pharmaceutical Science
Identifiers
urn:nbn:se:uu:diva-551562 (URN)
Available from: 2025-02-26 Created: 2025-02-26 Last updated: 2025-02-26
3. Freshly Isolated Human Jejunal Enterocytes for Presystemic Drug Metabolism Studies
Open this publication in new window or tab >>Freshly Isolated Human Jejunal Enterocytes for Presystemic Drug Metabolism Studies
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(English)Manuscript (preprint) (Other academic)
Abstract [en]

Enterocytes, the primary absorptive cells in the small intestinal epithelium, play a critical role in the presystemic biotransformation of orally administered drugs and other ingested chemicals. The assessment of intestinal drug metabolism is essential for determining the pharmacological efficacy and safety of new drug candidates. However, current in vitro models fall short in accurately mimicking human intestinal metabolic processes. Our study investigates the use of freshly isolated enterocytes from human jejunal tissue for drug metabolism research. Enterocytes were isolated from human jejunum using a non-enzymatic method, resulting in enterocyte isolations with high yield, high viability, and low apoptosic activity. ADME-relevant enzyme and transporter protein levels in enterocytes showed a strong correlation (R=0.82) with human jejunal mucosa. The metabolic activity of selected Phase I enzymes, including CES1/2, CYP3A4, CYP2C9, CYP1A2, CYP2D6, and CYP2C19, was evaluated, demonstrating their functionality in the isolated enterocytes. Of these CES1/2, CYP2C19, CYP2D6, and CYP3A4 seemed to display the highest activity. We conclude that freshly isolated human enterocytes are a promising alternative for in vitro studies of intestinal presystemic metabolism. 

Keywords
Human jejunum, Enterocytes, In vitro models, Drug metabolism
National Category
Pharmaceutical Sciences
Identifiers
urn:nbn:se:uu:diva-551563 (URN)
Available from: 2025-02-26 Created: 2025-02-26 Last updated: 2025-02-26
4. Advancing Drug Efflux Model: Co-culture of CRISPR-Edited MDCK II Clones Expressing Human MDR1 and BCRP
Open this publication in new window or tab >>Advancing Drug Efflux Model: Co-culture of CRISPR-Edited MDCK II Clones Expressing Human MDR1 and BCRP
(English)Manuscript (preprint) (Other academic)
Abstract [en]

Intestinal drug permeability is commonly studied in vitro using monolayer forming cells such as the Caco-2 or MDCK cell lines grown on a permeable support. These models allow both passive and active transport of drugs in solution to be studied. However, in the small intestine different processes, e.g. release, dissolution and digestion, are occurring simultaneously with permeation which can affect the resulting measured flux. This is especially true for drugs in need of enabling formulations and advanced drug delivery systems.

In this study we therefore established a co-culture model of two monolayer-forming MDCK cell lines, that overexpressed human multidrug resistance protein 1 (hMDR1) and human breast cancer resistance protein (hBCRP). These are the two most important efflux transporters expressed in the small intestine, of importance to drug absorption and drug-drug interactions at the intestinal level. We further validated the co-culture model by assessing the transport of substrates specific for, or shared between, these two transporters. Specific substrates were ritonavir, verapamil and labetalol (hMDR1) and dantrolene and fluvastatin (hBCRP), whereas the shared hMDR1/hBCRP substrate used was prazosin. Further, to evaluate the efficacy of this co-culture for assessing advanced drug delivery systems, we used it as the absorption layer in an in house developed enabling absorption (ENA) device. This is a device for simultaneous in vitro release/dissolution/digestion and permeation studies, and we have here used our co-culture in the ENA for investigating the dissolution and absorption of amorphous ritonavir.

Our results show that the co-culture enabled interactions with both hMDR1 and hBCRP to be studied. Further, using ENA we showed that this co-culture allowed both the dissolution and the absorption of ritonavir to be studied in a setup capturing the more dynamic processes occurring in vivo in the small intestine. In contrast to the dissolved ritonavir administered in a traditional transwell system on top of the co-culture monolayer, the ENA model included the impact of dissolution and supersaturation on absorption and its potential to influence the efflux observed in the system. We anticipate that this co-culture can be further optimized to mimic transporter expression levels found in different intestinal segments and thereby provide an in vitro model for studying the role of active efflux in absorption of drugs in need advanced formulations.

Keywords
MDCK cells, CRISPR-Cas9, ATP-binding cassette (ABC) transporter(s), Efflux pumps, Multidrug resistance protein 1 (MDR1), Breast cancer resistance protein (BCRP), Permeability, Membrane transporter, Drug transport, ENA, Proteomics, Human small intestine, In vitro-In vivo correlation
National Category
Pharmaceutical Sciences
Identifiers
urn:nbn:se:uu:diva-551564 (URN)
Available from: 2025-02-26 Created: 2025-02-26 Last updated: 2025-02-26

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