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Kubernetes as an approach for solving bioinformatic problems.
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Biology Education Centre.
2017 (English)Independent thesis Advanced level (professional degree), 20 credits / 30 HE creditsStudent thesis
Abstract [en]

The cluster orchestration tool Kubernetes enables easy deployment and

reproducibility of life science research by utilizing the advantages

of the container technology. The container technology allows for easy

tool creation, sharing and runs on any Linux system once it has been

built. The applicability of Kubernetes as an approach to run

bioinformatic workflows was evaluated and resulted in some examples

of how Kubernetes and containers could be used within the field of

life science and how they should not be used. The resulting examples

serves as proof of concepts and the general idea of how

implementation is done. Kubernetes allows for easy resource

management and includes automatic scheduling of workloads. It scales

rapidly and has some interesting components that are beneficial when

conducting life science research.

Place, publisher, year, edition, pages
2017. , p. 38
Series
UPTEC X ; 17 020
National Category
Bioinformatics and Systems Biology
Identifiers
URN: urn:nbn:se:uu:diva-330217OAI: oai:DiVA.org:uu-330217DiVA, id: diva2:1145028
Educational program
Molecular Biotechnology Engineering Programme
Supervisors
Examiners
Available from: 2017-10-17 Created: 2017-09-27 Last updated: 2017-10-17Bibliographically approved

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CiteExportLink to record
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Citation style
  • apa
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Output format
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